Let KAYAK do the searching
Based on KAYAK hotel searches, the most popular destination is Puerto Ayora (67% of total searches to Galapagos). The next most popular destination is Puerto Baquerizo Moreno (33%).
KAYAK users have found double rooms in Galapagos for as cheap as $40 (Puerto Ayora) in the last 3 days. The average price is $312.
In the last 72 hours, users have found Galapagos hotels for tonight for as low as $42 (Puerto Ayora). Users have also found 3-star hotels from $45 (Puerto Ayora) and 4-star+ hotels from $239 (Puerto Ayora).